EDGE
v1.5
1. EDGE Introduction
2. System requirements
3. Installation
4. Graphic User Interface (GUI)
5. Command Line Interface (CLI)
6. Output
7. Databases
8. Third Party Tools
9. Troubleshooting
10. Copyright
11. Contact Us and Citation
EDGE
Docs
»
EDGE:
E
mpowering the
D
evelopment of
G
enomics
E
xpertise
Edit on Bitbucket
EDGE:
E
mpowering the
D
evelopment of
G
enomics
E
xpertise
ΒΆ
1. EDGE Introduction
1.1. About EDGE Bioinformatics
1.2. Bioinformatics overview
1.3. Computational Environment
2. System requirements
2.1. Hardware Requirements
2.2. Ubuntu 14.04
2.3. CentOS 7
3. Installation
3.1. EDGE Installation
3.2. EDGE Docker image
3.3. EDGE VMware/OVF Image
4. Graphic User Interface (GUI)
4.1. User Login
4.2. Upload Files
4.3. Initiating an analysis job
4.4. Choosing processes/analyses
4.5. Submission of a job
4.6. Checking the status of an analysis job
4.7. Monitoring the Resource Usage
4.8. Management of Jobs
4.9. Project List Table
4.10. Other Methods of Accessing EDGE
5. Command Line Interface (CLI)
5.1. Configuration File
5.2. Test Run
5.3. Descriptions of each module
5.4. Other command-line utility scripts
6. Output
6.1. Example Output
7. Databases
7.1. EDGE provided databases
7.2. Building bwa index
7.3. SNP database genomes
7.4. Ebola Reference Genomes
8. Third Party Tools
8.1. Assembly
8.2. Annotation
8.3. Alignment
8.4. Taxonomy Classification
8.5. Phylogeny
8.6. Specialty Genes
8.7. Visualization and Graphic User Interface
8.8. Utility
8.9. Amplicon Analysis
9. Troubleshooting
9.1. Coverage Issues
9.2. Data Migration
9.3. Known Issues
9.4. Discussions / Bugs Reporting
10. Copyright
11. Contact Us and Citation
11.1. Citation
Read the Docs
v: v1.5
Versions
latest
v1.5
v1.1
develop
2.x
Downloads
pdf
htmlzip
epub
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.