8. Databases

8.1. EDGE provided databases

8.1.2. NCBI Refseq

EDGE prebuilt blast db and bwa_index of NCBI RefSeq genomes.

Warning

NCBI restructure the ftp site. The link for Bacteria below is an archive.

see $EDGE_HOME/database/bwa_index/id_mapping.txt for all gi/accession to genome name lookup table.

8.1.3. Krona taxonomy

8.1.3.1. Update Krona taxonomy db

Download these files from ftp://ftp.ncbi.nih.gov/pub/taxonomy:

wget ftp://ftp.ncbi.nih.gov/pub/taxonomy/gi_taxid_nucl.dmp.gz
wget ftp://ftp.ncbi.nih.gov/pub/taxonomy/gi_taxid_prot.dmp.gz
wget ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz

Transfer the files to the taxonomy folder in the standalone KronaTools installation and run:

$EDGE_HOME/thirdParty/KronaTools-2.4/updateTaxonomy.sh --local.

8.1.4. Metaphlan2 database

MetaPhlAn2 relies on unique clade-specific marker genes identified from ~17,000 reference genomes (~13,500 bacterial and archaeal, ~3,500 viral, and ~110 eukaryotic)

8.1.5. Human Genome

The bwa index is prebuilt in the EDGE. The human hs_ref_GRCh38 sequences from NCBI ftp site.

8.1.6. Kraken2 DB

Kraken2 is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Kraken2 database in EDGE is a pre-built database constructed from Refseq bacteria, archaea, and viral libraries and the GRCh38 human genome and UniVec_Core in RefSeq (as of Dec 20, 2018).

8.1.7. GOTTCHA DB

A novel, annotation-independent and signature-based metagenomic taxonomic profiling tool.

8.1.8. SNPdb

SNP database based on whole genome comparison. Current available db are Ecoli, Yersinia, Francisella, Brucella, Bacillus .

8.1.9. Invertebrate Vectors of Human Pathogens

The bwa index is prebuilt in the EDGE.

version: 2014 July 24

8.1.10. NCBI Nucleotide database (NT) database

8.1.11. VFDB

A Microbial database of virulence factors

8.1.12. ARDB

Antibiotic Resistance Genes Database

8.1.13. CARD

The Comprehensive Antibiotic Resistance Database

8.1.14. Amplicon: 16s/18s/ITS

For QIIME (Quantitative insights into Microbial Ecology) analysis

8.2. Building bwa index

Here take human genome as example.

  1. Download the human hs_ref_GRCh38 sequences from NCBI ftp site.

Go to ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/Assembled_chromosomes/seq/ Or use a provided perl script in $EDGE_HOME/scripts/

perl $EDGE_HOME/scripts/download_human_refseq_genome.pl output_dir
  1. Gunzip the downloaded fasta file and concatenate them into one human genome multifasta file:

    gunzip hs_ref_GRCh38.*.fa.gz
    cat hs_ref_GRCh38.*.fa > human_ref_GRCh38.all.fasta
    
  2. Use the installed bwa to build the index:

    $EDGE_HOME/bin/bwa index human_ref_GRCh38.all.fasta
    
Now, you can configure the config file with “host=/path/human_ref_GRCh38.all.fasta” for host removal step.

8.3. SNP database genomes

SNP database was pre-built from the below genomes.

8.3.1. Ecoli Genomes

Name Description URL
Ecoli_042 Escherichia coli 042, complete genome http://www.ncbi.nlm.nih.gov/nuccore/387605479
Ecoli_11128 Escherichia coli O111:H- str. 11128, complete genome http://www.ncbi.nlm.nih.gov/nuccore/260866153
Ecoli_11368 Escherichia coli O26:H11 str. 11368 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/260853213
Ecoli_12009 Escherichia coli O103:H2 str. 12009, complete genome http://www.ncbi.nlm.nih.gov/nuccore/260842239
Ecoli_2009EL2050 Escherichia coli O104:H4 str. 2009EL-2050 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/410480139
Ecoli_2009EL2071 Escherichia coli O104:H4 str. 2009EL-2071 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/407466711
Ecoli_2011C3493 Escherichia coli O104:H4 str. 2011C-3493 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/407479587
Ecoli_536 Escherichia coli 536, complete genome http://www.ncbi.nlm.nih.gov/nuccore/110640213
Ecoli_55989 Escherichia coli 55989 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/218693476
Ecoli_ABU_83972 Escherichia coli ABU 83972 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/386637352
Ecoli_APEC_O1 Escherichia coli APEC O1 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/117622295
Ecoli_ATCC_8739 Escherichia coli ATCC 8739 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/170018061
Ecoli_BL21_DE3 Escherichia coli BL21(DE3) chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/387825439
Ecoli_BW2952 Escherichia coli BW2952 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/238899406
Ecoli_CB9615 Escherichia coli O55:H7 str. CB9615 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/291280824
Ecoli_CE10 Escherichia coli O7:K1 str. CE10 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/386622414
Ecoli_CFT073 Escherichia coli CFT073 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/26245917
Ecoli_DH1 Escherichia coli DH1, complete genome http://www.ncbi.nlm.nih.gov/nuccore/387619774
Ecoli_Di14 Escherichia coli str. ‘clone D i14’ chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/386632422
Ecoli_Di2 Escherichia coli str. ‘clone D i2’ chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/386627502
Ecoli_E2348_69 Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/215485161
Ecoli_E24377A Escherichia coli E24377A chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/157154711
Ecoli_EC4115 Escherichia coli O157:H7 str. EC4115 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/209395693
Ecoli_ED1a Escherichia coli ED1a chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/218687878
Ecoli_EDL933 Escherichia coli O157:H7 str. EDL933 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/16445223
Ecoli_ETEC_H10407 Escherichia coli ETEC H10407, complete genome http://www.ncbi.nlm.nih.gov/nuccore/387610477
Ecoli_HS Escherichia coli HS, complete genome http://www.ncbi.nlm.nih.gov/nuccore/157159467
Ecoli_IAI1 Escherichia coli IAI1 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/218552585
Ecoli_IAI39 Escherichia coli IAI39 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/218698419
Ecoli_IHE3034 Escherichia coli IHE3034 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/386597751
Ecoli_K12_DH10B Escherichia coli str. K-12 substr. DH10B chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/170079663
Ecoli_K12_MG1655 Escherichia coli str. K-12 substr. MG1655 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/49175990
Ecoli_K12_W3110 Escherichia coli str. K-12 substr. W3110, complete genome http://www.ncbi.nlm.nih.gov/nuccore/388476123
Ecoli_KO11FL Escherichia coli KO11FL chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/386698504
Ecoli_LF82 Escherichia coli LF82, complete genome http://www.ncbi.nlm.nih.gov/nuccore/222154829
Ecoli_NA114 Escherichia coli NA114 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/386617516
Ecoli_NRG_857C Escherichia coli O83:H1 str. NRG 857C chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/387615344
Ecoli_P12b Escherichia coli P12b chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/386703215
Ecoli_REL606 Escherichia coli B str. REL606 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/254160123
Ecoli_RM12579 Escherichia coli O55:H7 str. RM12579 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/387504934
Ecoli_S88 Escherichia coli S88 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/218556939
Ecoli_SE11 Escherichia coli O157:H7 str. Sakai chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/15829254
Ecoli_SE15 Escherichia coli SE11 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/209917191
Ecoli_SMS35 Escherichia coli SE15, complete genome http://www.ncbi.nlm.nih.gov/nuccore/387828053
Ecoli_Sakai Escherichia coli SMS-3-5 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/170679574
Ecoli_TW14359 Escherichia coli O157:H7 str. TW14359 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/254791136
Ecoli_UM146 Escherichia coli UM146 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/386602643
Ecoli_UMN026 Escherichia coli UMN026 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/218703261
Ecoli_UMNK88 Escherichia coli UMNK88 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/386612163
Ecoli_UTI89 Escherichia coli UTI89 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/91209055
Ecoli_W Escherichia coli W chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/386707734
Ecoli_Xuzhou21 Escherichia coli Xuzhou21 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/387880559
Sboydii_CDC_3083_94 Shigella boydii CDC 3083-94 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/187730020
Sboydii_Sb227 Shigella boydii Sb227 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/82542618
Sdysenteriae_Sd197 Shigella dysenteriae Sd197, complete genome http://www.ncbi.nlm.nih.gov/nuccore/82775382
Sflexneri_2002017 Shigella flexneri 2002017 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/384541581
Sflexneri_2a_2457T Shigella flexneri 2a str. 2457T, complete genome http://www.ncbi.nlm.nih.gov/nuccore/30061571
Sflexneri_2a_301 Shigella flexneri 2a str. 301 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/344915202
Sflexneri_5_8401 Shigella flexneri 5 str. 8401 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/110804074
Ssonnei_53G Shigella sonnei 53G, complete genome http://www.ncbi.nlm.nih.gov/nuccore/377520096
Ssonnei_Ss046 Shigella sonnei Ss046 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/74310614

8.3.2. Yersinia Genomes

Name Description URL
Ypestis_A1122 Yersinia pestis A1122 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/384137007
Ypestis_Angola Yersinia pestis Angola chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/162418099
Ypestis_Antiqua Yersinia pestis Antiqua chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/108805998
Ypestis_CO92 Yersinia pestis CO92 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/16120353
Ypestis_D106004 Yersinia pestis D106004 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/384120592
Ypestis_D182038 Yersinia pestis D182038 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/384124469
Ypestis_KIM_10 Yersinia pestis KIM 10 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/22123922
Ypestis_Medievalis_Harbin_35 Yersinia pestis biovar Medievalis str. Harbin 35 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/384412706
Ypestis_Microtus_91001 Yersinia pestis biovar Microtus str. 91001 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/45439865
Ypestis_Nepal516 Yersinia pestis Nepal516 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/108810166
Ypestis_Pestoides_F Yersinia pestis Pestoides F chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/145597324
Ypestis_Z176003 Yersinia pestis Z176003 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/294502110
Ypseudotuberculosis_IP_31758 Yersinia pseudotuberculosis IP 31758 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/153946813
Ypseudotuberculosis_IP_32953 Yersinia pseudotuberculosis IP 32953 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/51594359
Ypseudotuberculosis_PB1 Yersinia pseudotuberculosis PB1/+ chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/186893344
Ypseudotuberculosis_YPIII Yersinia pseudotuberculosis YPIII chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/170022262

8.3.3. Francisella Genomes

Name Description URL
Fnovicida_U112 Francisella novicida U112 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/118496615
Ftularensis_holarctica_F92 Francisella tularensis subsp. holarctica F92 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/423049750
Ftularensis_holarctica_FSC200 Francisella tularensis subsp. holarctica FSC200 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/422937995
Ftularensis_holarctica_FTNF00200 Francisella tularensis subsp. holarctica FTNF002-00 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/156501369
Ftularensis_holarctica_LVS Francisella tularensis subsp. holarctica LVS chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/89255449
Ftularensis_holarctica_OSU18 Francisella tularensis subsp. holarctica OSU18 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/115313981
Ftularensis_mediasiatica_FSC147 Francisella tularensis subsp. mediasiatica FSC147 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/187930913
Ftularensis_TIGB03 Francisella tularensis TIGB03 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/379716390
Ftularensis_tularensis_FSC198 Francisella tularensis subsp. tularensis FSC198 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/110669657
Ftularensis_tularensis_NE061598 Francisella tularensis subsp. tularensis NE061598 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/385793751
Ftularensis_tularensis_SCHU_S4 Francisella tularensis subsp. tularensis SCHU S4 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/255961454
Ftularensis_tularensis_TI0902 Francisella tularensis subsp. tularensis TI0902 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/379725073
Ftularensis_tularensis_WY963418 Francisella tularensis subsp. tularensis WY96-3418 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/134301169

8.3.4. Brucella Genomes

Name Description URL
Babortus_1_9941 Brucella abortus bv. 1 str. 9-941 http://www.ncbi.nlm.nih.gov/bioproject/58019
Babortus_A13334 Brucella abortus A13334 http://www.ncbi.nlm.nih.gov/bioproject/83615
Babortus_S19 Brucella abortus S19 http://www.ncbi.nlm.nih.gov/bioproject/58873
Bcanis_ATCC_23365 Brucella canis ATCC 23365 http://www.ncbi.nlm.nih.gov/bioproject/59009
Bcanis_HSK_A52141 Brucella canis HSK A52141 http://www.ncbi.nlm.nih.gov/bioproject/83613
Bceti_TE10759_12 Brucella ceti TE10759-12 http://www.ncbi.nlm.nih.gov/bioproject/229880
Bceti_TE28753_12 Brucella ceti TE28753-12 http://www.ncbi.nlm.nih.gov/bioproject/229879
Bmelitensis_1_16M Brucella melitensis bv. 1 str. 16M http://www.ncbi.nlm.nih.gov/bioproject/200008
Bmelitensis_Abortus_2308 Brucella melitensis biovar Abortus 2308 http://www.ncbi.nlm.nih.gov/bioproject/16203
Bmelitensis_ATCC_23457 Brucella melitensis ATCC 23457 http://www.ncbi.nlm.nih.gov/bioproject/59241
Bmelitensis_M28 Brucella melitensis M28 http://www.ncbi.nlm.nih.gov/bioproject/158857
Bmelitensis_M590 Brucella melitensis M5-90 http://www.ncbi.nlm.nih.gov/bioproject/158855
Bmelitensis_NI Brucella melitensis NI http://www.ncbi.nlm.nih.gov/bioproject/158853
Bmicroti_CCM_4915 Brucella microti CCM 4915 http://www.ncbi.nlm.nih.gov/bioproject/59319
Bovis_ATCC_25840 Brucella ovis ATCC 25840 http://www.ncbi.nlm.nih.gov/bioproject/58113
Bpinnipedialis_B2_94 Brucella pinnipedialis B2/94 http://www.ncbi.nlm.nih.gov/bioproject/71133
Bsuis_1330 Brucella suis 1330 http://www.ncbi.nlm.nih.gov/bioproject/159871
Bsuis_ATCC_23445 Brucella suis ATCC 23445 http://www.ncbi.nlm.nih.gov/bioproject/59015
Bsuis_VBI22 Brucella suis VBI22 http://www.ncbi.nlm.nih.gov/bioproject/83617

8.3.5. Bacillus Genomes

Name Description URL
Banthracis_A0248 Bacillus anthracis str. A0248, complete genome http://www.ncbi.nlm.nih.gov/nuccore/229599883
Banthracis_Ames Bacillus anthracis str. ‘Ames Ancestor’ chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/50196905
Banthracis_Ames_Ancestor Bacillus anthracis str. Ames chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/30260195
Banthracis_CDC_684 Bacillus anthracis str. CDC 684 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/227812678
Banthracis_H9401 Bacillus anthracis str. H9401 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/386733873
Banthracis_Sterne Bacillus anthracis str. Sterne chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/49183039
Bcereus_03BB102 Bacillus cereus 03BB102, complete genome http://www.ncbi.nlm.nih.gov/nuccore/225862057
Bcereus_AH187 Bacillus cereus AH187 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/217957581
Bcereus_AH820 Bacillus cereus AH820 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/218901206
Bcereus_anthracis_CI Bacillus cereus biovar anthracis str. CI chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/301051741
Bcereus_ATCC_10987 Bacillus cereus ATCC 10987 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/42779081
Bcereus_ATCC_14579 Bacillus cereus ATCC 14579, complete genome http://www.ncbi.nlm.nih.gov/nuccore/30018278
Bcereus_B4264 Bacillus cereus B4264 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/218230750
Bcereus_E33L Bacillus cereus E33L chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/52140164
Bcereus_F837_76 Bacillus cereus F837/76 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/376264031
Bcereus_G9842 Bacillus cereus G9842 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/218895141
Bcereus_NC7401 Bacillus cereus NC7401, complete genome http://www.ncbi.nlm.nih.gov/nuccore/375282101
Bcereus_Q1 Bacillus cereus Q1 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/222093774
Bthuringiensis_AlHakam Bacillus thuringiensis str. Al Hakam chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/118475778
Bthuringiensis_BMB171 Bacillus thuringiensis BMB171 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/296500838
Bthuringiensis_Bt407 Bacillus thuringiensis Bt407 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/409187965
Bthuringiensis_chinensis_CT43 Bacillus thuringiensis serovar chinensis CT-43 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/384184088
Bthuringiensis_finitimus_YBT020 Bacillus thuringiensis serovar finitimus YBT-020 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/384177910
Bthuringiensis_konkukian_9727 Bacillus thuringiensis serovar konkukian str. 97-27 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/49476684
Bthuringiensis_MC28 Bacillus thuringiensis MC28 chromosome, complete genome http://www.ncbi.nlm.nih.gov/nuccore/407703236

8.4. Ebola Reference Genomes

Accession Description URL
NC_014372 Tai Forest ebolavirus isolate Tai Forest virus H.sapiens-tc/CIV/1994/Pauleoula-CI, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/NC_014372
FJ217162 Cote d’Ivoire ebolavirus, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/FJ217162
FJ968794 Sudan ebolavirus strain Boniface, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/FJ968794
NC_006432 Sudan ebolavirus isolate Sudan virus H.sapiens-tc/UGA/2000/Gulu-808892, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/NC_006432
KJ660348 Zaire ebolavirus isolate H.sapiens-wt/GIN/2014/Gueckedou-C05, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KJ660348
KJ660347 Zaire ebolavirus isolate H.sapiens-wt/GIN/2014/Gueckedou-C07, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KJ660347
KJ660346 Zaire ebolavirus isolate H.sapiens-wt/GIN/2014/Kissidougou-C15, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KJ660346
JN638998 Sudan ebolavirus - Nakisamata, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/JN638998
AY354458 Zaire ebolavirus strain Zaire 1995, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/AY354458
AY729654 Sudan ebolavirus strain Gulu, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/AY729654
EU338380 Sudan ebolavirus isolate EBOV-S-2004 from Sudan, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/EU338380
KM655246 Zaire ebolavirus isolate H.sapiens-tc/COD/1976/Yambuku-Ecran, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KM655246
KC242801 Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/1976/deRoover, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KC242801
KC242800 Zaire ebolavirus isolate EBOV/H.sapiens-tc/GAB/2002/Ilembe, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KC242800
KC242799 Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/1995/13709 Kikwit, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KC242799
KC242798 Zaire ebolavirus isolate EBOV/H.sapiens-tc/GAB/1996/1Ikot, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KC242798
KC242797 Zaire ebolavirus isolate EBOV/H.sapiens-tc/GAB/1996/1Oba, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KC242797
KC242796 Zaire ebolavirus isolate EBOV/H.sapiens-tc/COD/1995/13625 Kikwit, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KC242796
KC242795 Zaire ebolavirus isolate EBOV/H.sapiens-tc/GAB/1996/1Mbie, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KC242795
KC242794 Zaire ebolavirus isolate EBOV/H.sapiens-tc/GAB/1996/2Nza, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KC242794